CGGA
| CGGA | (Co-expressed Gene Groups Analysis) |
|---|---|
| Release date | 2006 |
| Implementation | R |
| Authors | Martinez, R., Pasquier, N., and Pasquier, C. |
| Availability | binary downloadable here |
CGGA (Co-expressed Gene Groups Analysis) 1 2 3 4 performs the extraction of bi-clusters of co-regulated genes from integrated gene expression data and gene annotations obtained from biological knowledge. First, the gene rank hierarchy is constructed using SAM F-Scores and then, the CGGA algorithm is applied to group of co-expressed genes.
Related publications
- (2006). Co-Expressed Gene Groups Analysis (CGGA): An Automatic Tool for the Interpretation of Microarray Experiments. Journal of Integrative Bioinformatics.↩︎
- (2006). Interpreting Microarray Experiments via Co-Expressed Gene Groups Analysis. 9th International Conference of Discovery Science (ICDS'06), Lecture Notes in Computer Science.↩︎
- (2006). Analyse des groupes de gènes co-exprimés (AGGC): un outil automatique pour l'interprétation des expériences de biopuces. 13ème Rencontres de la Société Francophone de Classification (SFC’06).↩︎
- (2008). Analyse des groupes de gènes co-exprimés: un outil automatique pour l'interprétation des expériences de biopuces (version étendue). Revue des Nouvelles Technologies de l’Information (RNTI-C-2), Classification : points de vue croisés.↩︎
Claude Pasquier
Researcher in Computer Science / Computational Biology
Université côte d’Azur, CNRS, I3S Laboratory, Sophia Antipolis