CGGA

CGGA(Co-expressed Gene Groups Analysis)
Release date2006
ImplementationR
AuthorsMartinez, R., Pasquier, N., and Pasquier, C.
Availabilitybinary downloadable here

CGGA (Co-expressed Gene Groups Analysis) 1 2 3 4 performs the extraction of bi-clusters of co-regulated genes from integrated gene expression data and gene annotations obtained from biological knowledge. First, the gene rank hierarchy is constructed using SAM F-Scores and then, the CGGA algorithm is applied to group of co-expressed genes.


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  3. (2006). Interpreting Microarray Experiments via Co-Expressed Gene Groups Analysis. 9th International Conference of Discovery Science (ICDS'06), Lecture Notes in Computer Science.

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Claude Pasquier
Claude Pasquier
Researcher in Computer Science / Computational Biology

Université côte d’Azur, CNRS, I3S Laboratory, Sophia Antipolis